There are 29 ligand heavy atoms Ligand center of coords (x y z): 37.8585517241379 5.89365517241379 16.8557586206897 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14047 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9464 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9464 Number of spheres polar: 4507, nonpolar: 3915, out of current total: 9464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.86640 49.85500 -6.10300 17.89140 4.85680 28.85560 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1373 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 673 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 655 Spheres center of coords (x y z): 34.3774809160306 5.94385679389312 18.2112119083969 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.2584208295932 Final number of output spheres is: 120 Number of polar spheres: 67 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 29