DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-01.c.bkslab.org 26-Jan-12 19:43:25 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_mr_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1695750 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -0.1500015 52.22200 2.9983521E-03 grid max 38.35000 89.22200 40.50300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24982 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C02574284 839 11810 23 1 33.8 0.06 E C02574284 1 -4.19 -30.01 7.08 -5.77 -32.89 2 C02574284 980 11068 23 1 55.7 0.05 E C02574284 1 -4.99 -29.40 6.91 -5.75 -33.22 3 C02574285 1123 13048 23 1 87.4 0.06 E C02574285 1 -4.79 -33.29 7.61 -5.54 -36.01 4 C02574285 1293 9604 23 1 53.3 0.05 E C02574285 1 -3.52 -31.08 7.40 -5.55 -32.75 5 C03814383 823 23638 23 1 190.0 0.11 E C03814383 1 -4.71 -35.00 6.15 -5.80 -39.36 6 C03814383 516 12586 23 1 86.0 0.06 E C03814383 1 -4.27 -35.94 6.17 -5.80 -39.84 7 C03831941 2249 28 32 2 0.01 bump 8 C03831941 8806 6386 32 2 0.10 bump 9 C03831941 1480 9 32 2 0.00 bump 10 C03831941 8869 6389 32 2 0.10 bump 11 C03833819 2266 50891 27 18 2.0 0.07 E C03833819 4 -4.00 23.90 8.27 -3.41 24.76 12 C03833819 1641 33353 27 18 4.0 0.05 E C03833819 4 -2.58 38.96 8.26 -3.69 40.95 13 C03833820 1145 5481 28 9 6.6 0.02 E C03833820 3 -7.29 -2.33 9.91 -3.74 -3.45 14 C03833820 2010 79003 28 18 50.3 0.11 E C03833820 4 -7.54 -18.32 9.92 -3.72 -19.66 15 C03833821 1468 163010 26 54 156.3 0.18 E C03833821 4 -8.93 -36.14 10.54 -1.28 -35.81 16 C03833821 1749 189065 26 54 222.5 0.20 E C03833821 4 -8.70 -38.14 10.60 -1.30 -37.54 17 C03833822 1400 166574 26 54 162.2 0.18 E C03833822 4 -8.11 -30.56 9.31 -1.25 -30.62 18 C03833822 1338 158108 26 54 152.0 0.17 E C03833822 4 -7.94 -34.88 9.54 -1.30 -34.58 19 C03833823 1748 177484 24 6 342.3 0.29 E C03833823 2 -7.30 -35.63 8.79 -4.23 -38.37 20 C03833823 1573 168179 24 6 436.0 0.27 E C03833823 2 -6.41 -37.91 8.87 -4.17 -39.62 21 C03833824 1500 171730 26 18 270.8 0.22 E C03833824 3 -6.16 -37.08 13.76 -2.85 -32.34 22 C03833824 1569 121328 26 18 131.5 0.16 E C03833824 3 -5.44 -28.83 13.67 -2.75 -23.35 23 C03833825 5882 2664 29 2 0.0 0.02 E C03833825 2 -2.41 323.07 14.60 -6.81 328.45 24 C03833825 5472 2078 29 2 0.0 0.02 E C03833825 2 -1.68 315.58 14.48 -6.78 321.60 25 C03833952 523 15401 23 1 102.8 0.08 E C03833952 1 -4.53 -29.88 5.44 -5.74 -34.71 26 C03833952 594 20631 23 1 145.9 0.10 E C03833952 1 -4.27 -32.03 5.47 -5.73 -36.55 27 C03833953 959 13426 23 1 30.0 0.07 E C03833953 1 -2.88 -22.73 5.06 -5.66 -26.20 28 C03833953 983 12989 23 1 26.0 0.07 E C03833953 1 -3.11 -24.45 5.08 -5.64 -28.12 29 C03833954 830 25502 23 3 67.5 0.06 E C03833954 2 -3.40 -30.06 3.78 -4.18 -33.87 30 C03833954 786 28388 23 3 84.3 0.08 E C03833954 2 -3.71 -31.36 3.80 -4.13 -35.40 31 C04646295 6578 4952 34 56862 0.05 bump 32 C04646295 4720 83901 34 6804 0.11 bump 33 C04646295 1025 2089 34 34020 0.01 bump EOF: ../database_link/dud_mr_lig_01.db.gz end of file encountered total minimization steps = 310016 for debugging, time = 3.890000 solvation corrected scores: (a) 1 C03814383 score: -39.843 nathvy = 23 nconfs = 1 2 C03833823 score: -39.623 nathvy = 24 nconfs = 6 3 C03814383 score: -39.358 nathvy = 23 nconfs = 1 4 C03833823 score: -38.369 nathvy = 24 nconfs = 6 5 C03833821 score: -37.539 nathvy = 26 nconfs = 54 6 C03833952 score: -36.554 nathvy = 23 nconfs = 1 7 C02574285 score: -36.006 nathvy = 23 nconfs = 1 8 C03833821 score: -35.813 nathvy = 26 nconfs = 54 9 C03833954 score: -35.399 nathvy = 23 nconfs = 3 10 C03833952 score: -34.709 nathvy = 23 nconfs = 1 11 C03833822 score: -34.579 nathvy = 26 nconfs = 54 12 C03833954 score: -33.869 nathvy = 23 nconfs = 3 13 C02574284 score: -33.222 nathvy = 23 nconfs = 1 14 C02574284 score: -32.887 nathvy = 23 nconfs = 1 15 C02574285 score: -32.745 nathvy = 23 nconfs = 1 16 C03833824 score: -32.338 nathvy = 26 nconfs = 18 17 C03833822 score: -30.617 nathvy = 26 nconfs = 54 18 C03833953 score: -28.122 nathvy = 23 nconfs = 1 19 C03833953 score: -26.202 nathvy = 23 nconfs = 1 20 C03833824 score: -23.351 nathvy = 26 nconfs = 18 21 C03833820 score: -19.661 nathvy = 28 nconfs = 18 22 C03833820 score: -3.445 nathvy = 28 nconfs = 9 23 C03833819 score: 24.763 nathvy = 27 nconfs = 18 24 C03833819 score: 40.953 nathvy = 27 nconfs = 18 25 C03833825 score: 321.597 nathvy = 29 nconfs = 2 26 C03833825 score: 328.455 nathvy = 29 nconfs = 2 Date and Time: 26-Jan-12 19:43:30 elapsed time (sec): 3.9200