usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 18.8227692307692 72.5325769230769 20.4016923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1426 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 401 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 401 Number of spheres polar: 143, nonpolar: 214, out of current total: 401 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.82765 28.77802 62.56793 82.51153 12.73633 30.39757 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 220 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 188 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 137 Spheres center of coords (x y z): 18.6982886131387 70.7616318978103 19.3452535766423 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.87845167791838 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26