Creating binding-site residue list Creating molecular surface real 0m1.629s user 0m0.292s sys 0m0.168s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:2050 spheres. 221. 225. 226. 226. 226. 226. 227. 227. 227. 227. 227. 232. 232. 232. 232. 232. 237. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 241. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 242. 243. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 245. 246. 246. 246. 246. 246. 246. 246. 246. 249. 249. 249. 250. 250. 251. 251. 251. 251. 251. 251. 259. 260. 260. 260. 287. 293. 299. 299. 299. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 312. 312. 320. 320. 320. 320. 320. 320. 321. 322. 322. 322. 404. 404. 404. 404. 404. 404. 404. 407. 407. 407. 407. 408. 408. 408. 408. 408. 408. 408. 408. 408. 408. 408. 408. 408. 408. 410. 411. 411. 411. 411. 411. 412. 412. 412. 412. 424. 424. 424. 424. 424. 424. 424. 424. 424. 424. 424. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 438. 440. 440. 440. 440. 440. 440. 440. 440. 440. 440. 446. 513. 514. 514. 514. 514. 514. 514. 514. 514. 514. 514. 514. 514. 514. 514. 515. 515. 515. 515. 515. 515. 515. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 516. 523. 534. 534. 534. 534. 534. 534. 534. 534. 534. 541. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 542. 545. 545. 545. 545. 545. 546. 546. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 547. 548. 548. 548. 548. 548. 548. 548. 548. 548. 548. 549. 551. 551. 551. 553. 559. 559. 559. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 565. 567. 567. 567. 567. 567. 567. 569. 569. 569. 570. 570. 570. 570. 570. 570. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 571. 577. 577. 577. 577. 577. 577. 577. 577. 577. 577. 577. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 578. 579. 579. 579. 579. 579. 579. 583. 583. 583. 583. 583. 583. 583. 585. 586. 587. 588. 588. 588. 590. 590. 590. 591. 591. 592. 592. 592. 592. 592. 593. 593. 593. 593. 593. 593. 593. 593. 593. 593. 593. 593. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 596. 600. 603. 603. 603. 603. 603. 603. 603. 604. 604. 605. 605. 605. 605. 605. 606. 606. 606. 606. 606. 606. 606. 606. 606. 606. 606. 606. 606. 609. 611. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 613. 616. 616. 616. 616. 617. 617. 617. 617. 621. 623. 623. 635. 635. 642. 642. 642. 642. 644. 644. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 654. 654. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 658. 659. 659. 659. 659. 659. 659. 659. 659. 659. 659. 659. 659. 663. 663. 663. 663. 663. 667. 670. 671. 671. 671. 675. 675. 675. 675. 675. 675. 675. 722. 728. 728. 728. 728. 729. 729. 741. 741. 742. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 744. 746. 748. 748. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 749. 750. 750. 750. 755. 755. 755. 755. 755. 755. 755. 755. 755. 755. 755. 755. 755. 755. 756. 758. 758. 759. 759. 759. 759. 759. 759. 759. 759. 759. 760. 760. 760. 760. 760. 760. 760. 760. 760. 761. 761. 762. 763. 763. 763. 763. 763. 763. 763. 763. 763. 763. 763. 763. 763. 768. 768. 769. 769. 769. 769. 769. 769. 769. 771. 771. 775. 775. 775. 775. 775. 775. 775. 775. 776. 777. 777. 777. 778. 778. 779. 779. 779. 779. 779. 779. 780. 780. 780. 780. 780. 780. 780. 780. 780. 780. 780. 780. 780. 782. 783. 783. 783. 784. 784. 784. 784. 784. 784. 784. 784. 787. 787. 787. 787. 787. 787. 787. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 789. 790. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 792. 800. 800. 800. 800. 800. 800. 800. 800. 801. 801. 801. 801. 801. 801. 801. 801. 801. 801. 801. 801. 815. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 817. 818. 818. 818. 819. 819. 819. 819. 819. 819. 819. 819. 819. 819. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 820. 821. 821. 824. 824. 824. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 826. 827. 827. 827. 827. 827. 827. 827. 827. 827. 827. 827. 827. 827. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 828. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 829. 831. 831. 833. 836. 836. 836. 836. 836. 836. 836. 836. 836. 838. 838. 838. 838. 838. 838. 838. 838. 838. 838. 844. 852. 852. 852. 853. 853. 853. 853. 855. 855. 855. 856. 856. 856. 856. 857. 857. 857. 857. 857. 857. 857. 857. 857. 857. 857. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 859. 861. 861. 861. 861. 863. 863. 863. 863. 863. 863. 864. 864. 864. 865. 865. 865. 865. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 867. 871. 872. 873. 873. 873. 874. 875. 875. 875. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 880. 882. 882. 882. 882. 882. 882. 883. 883. 883. 883. 883. 883. 883. 883. 883. 886. 886. 886. 886. 886. 887. 887. 887. 887. 887. 888. 888. 888. 888. 888. 888. 888. 888. 889. 889. 890. 890. 890. 890. 891. 891. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 892. 893. 893. 893. 893. 893. 893. 893. 893. 893.1024.1024.1024.1024.1042.1042.1042.1042.1045.1045.1045.1045.1045.1045.1045.1045.1045.1045.1045.1045.1052.1052.1052.1057.1057.1057.1057.1057.1058.1058.1058.1058.1058.1058.1058.1058.1058.1086.1086.1087.1089.1089.1091.1091.1091.1091.1091.1091.1091.1091.1091.1091.1091.1091.1091.1091.1092.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1093.1097.1097.1097.1097.1097.1098.1100.1100.1100.1100.1100.1100.1104.1104.1104.1104.1104.1106.1106.1108.1108.1108.1108.1108.1108.1113.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1115.1117.1118.1118.1118.1118.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1120.1121.1123.1126.1126.1126.1127.1129.1129.1129.1129.1129.1129.1129.1129.1129.1129.1129.1129.1133.1133.1133.1152.1152.1153.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1172.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1193.1193.1193.1193.1193.1193.1194.1194.1194.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1196.1200.1200.1200.1200.1200.1200.1201.1201.1201.1202.1202.1202.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1204.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1219.1219.1220.1220.1220.1220.1220.1220.1220.1221.1221.1221.1221.1221.1221.1222.1222.1223.1223.1223.1224.1224.1224.1224.1224.1224.1224.1224.1224.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1246.1246.1246.1246.1246.1247.1247.1247.1247.1247.1247.1247.1247.1248.1248.1248.1248.1248.1248.1248.1248.1248.1248.1248.1248.1248.1248.1252.1254.1255.1255.1255.1255.1257.1257.1257.1257.1257.1257.1257.1257.1257.1257.1257.1257.1257.1258.1260.1260.1260.1260.1260.1260.1261.1261.1261.1261.1263.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1264.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1265.1266.1266.1266.1266.1267.1267.1267.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1268.1270.1270.1270.1270.1270.1271.1272.1272.1272.1272.1274.1274.1275.1275.1275.1275.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1277.1277.1277.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1278.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1279.1280.1280.1280.1281.1281.1281.1281.1281.1281.1281.1281.1282.1283.1283.1285.1286.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1287.1291.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1300.1300.1300.1300.1300.1300.1300.1300.1300.1300.1300.1300.1301.1301.1301.1301.1301.1301.1301.1301.1304.1306.1306.1306.1306.1307.1309.1309.1310.1310.1310.1310.1310.1310.1310.1312.1312.1312.1312.1312.1312.1312.1312.1313.1313.1313.1313.1313.1313.1313.1313.1313.1313.1313.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1315.1316.1316.1316.1316.1316.1316.1317.1317.1317.1317.1317.1317.1317.1320.1320.1320.1320.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1321.1322.1322.1322.1322.1323.1323.1323.1555.1555.1555.1555.1555.1555.1556.1556.1556.1556.1556.1556.1556.1556.1556.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 19m35.850s user 15m50.850s sys 0m0.069s Heavy solvent excluded grid being made FORTRAN STOP real 22m47.021s user 22m34.601s sys 0m0.126s