usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 47.705 7.32640625 31.547125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1513 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 813 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 813 Number of spheres polar: 162, nonpolar: 472, out of current total: 813 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.77337 57.70021 -2.66255 17.31511 21.62104 41.40120 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 476 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 415 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 378 Spheres center of coords (x y z): 48.3902392328042 7.62879391534391 31.6301913227513 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5513166042689 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32