Distance from surface specified: 1.80 There are 32 ligand heavy atoms Ligand center of coords (x y z): 47.705 7.32640625 31.547125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13464 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11149 WARNING: removing a crystallographic sphere that is distance 1.82610268057413 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.94856716589395 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10803 Number of spheres polar: 5442, nonpolar: 3971, out of current total: 10803 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.70520 59.98400 -6.66340 21.32640 17.90100 45.54240 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1442 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 797 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 775 Spheres center of coords (x y z): 48.939471483871 6.04783819354839 31.8553969032258 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.3852908633954 Final number of output spheres is: 200 Number of polar spheres: 111 Number of nonpolar spheres: 75 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 30