There are 32 ligand heavy atoms Ligand center of coords (x y z): 47.705 7.32640625 31.547125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13464 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9470 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9470 Number of spheres polar: 4667, nonpolar: 3577, out of current total: 9470 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.71840 59.63680 -4.67060 19.32440 19.65880 43.50460 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1185 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 701 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 692 Spheres center of coords (x y z): 49.9241031791908 6.42365751445086 32.0326046242774 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.52416734861751 Final number of output spheres is: 120 Number of polar spheres: 67 Number of nonpolar spheres: 50 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32