usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 31.83472 -9.61824 63.96668 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 981 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 573 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 570 Number of spheres polar: 249, nonpolar: 183, out of current total: 570 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.86278 41.62061 -19.56004 0.37559 55.72397 73.69697 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 208 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 159 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 136 Spheres center of coords (x y z): 30.5382445588235 -10.2100875735294 66.7963080882353 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.59328968254383 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 25