Distance from surface specified: 1.80 There are 25 ligand heavy atoms Ligand center of coords (x y z): 31.83472 -9.61824 63.96668 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 10364 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 8470 WARNING: removing a crystallographic sphere that is distance 1.9564429457564 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.85862233926099 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8184 Number of spheres polar: 5646, nonpolar: 1829, out of current total: 8184 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.84580 45.42560 -23.61580 4.37480 50.01520 77.94060 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1024 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 523 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 492 Spheres center of coords (x y z): 29.5839203252032 -8.46718739837398 69.357518292683 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.1903506741364 Final number of output spheres is: 200 Number of polar spheres: 133 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 23