usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 39.3720357142857 36.4361785714286 29.7552142857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1108
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 673
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 661
Number of spheres polar: 126, nonpolar: 427, out of current total: 661
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.67537 47.60972 26.46273 46.42302 19.77219 39.53499
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 309
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 259
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 183
Spheres center of coords (x y z): 38.9979871584699 37.1145958469946 30.0898583606557
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.95433778522179
Final number of output spheres is: 60
Number of polar spheres: 6
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 28