Distance from surface specified: 1.80 There are 28 ligand heavy atoms Ligand center of coords (x y z): 39.3720357142857 36.4361785714286 29.7552142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11172 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10141 WARNING: removing a crystallographic sphere that is distance 1.63739243921547 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9908 Number of spheres polar: 4817, nonpolar: 4069, out of current total: 9908 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.41760 50.22200 22.43900 50.39620 15.76960 43.73720 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1181 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 685 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 574 Spheres center of coords (x y z): 40.7247170731707 38.0051829268292 30.1992557491289 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.056393689848 Final number of output spheres is: 200 Number of polar spheres: 90 Number of nonpolar spheres: 99 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 27