Creating binding-site residue list Creating molecular surface real 0m1.345s user 0m0.220s sys 0m0.156s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1189 spheres. 1. 1. 1. 1. 1. 1. 1. 4. 4. 4. 4. 4. 4. 14. 120. 120. 120. 120. 120. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 135. 136. 145. 145. 145. 145. 146. 146. 146. 148. 148. 148. 148. 148. 148. 148. 148. 148. 148. 151. 151. 151. 151. 151. 151. 151. 151. 151. 151. 151. 151. 151. 151. 153. 153. 153. 153. 153. 153. 153. 153. 153. 153. 155. 155. 155. 155. 155. 155. 155. 155. 155. 155. 155. 155. 155. 155. 158. 158. 159. 162. 162. 162. 162. 162. 162. 162. 162. 162. 162. 162. 163. 163. 163. 163. 163. 163. 166. 166. 166. 166. 166. 166. 166. 166. 166. 170. 172. 172. 172. 173. 173. 173. 176. 176. 176. 185. 185. 281. 281. 284. 284. 284. 285. 286. 286. 286. 286. 286. 286. 286. 286. 286. 287. 287. 287. 287. 287. 287. 287. 287. 287. 288. 288. 288. 288. 288. 288. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 291. 291. 292. 292. 294. 294. 294. 294. 302. 302. 302. 302. 302. 302. 303. 303. 303. 303. 303. 303. 303. 306. 306. 306. 306. 306. 306. 306. 306. 306. 306. 306. 306. 306. 306. 307. 307. 307. 308. 308. 308. 308. 308. 309. 309. 309. 309. 309. 309. 309. 310. 313. 313. 313. 313. 313. 313. 313. 313. 313. 313. 313. 314. 314. 314. 314. 314. 314. 314. 317. 317. 317. 317. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 406. 406. 406. 406. 406. 406. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 567. 567. 567. 567. 567. 567. 567. 567. 567. 567. 569. 569. 569. 569. 569. 569. 569. 569. 569. 569. 571. 576. 576. 576. 576. 576. 577. 577. 577. 577. 579. 579. 579. 579. 583. 584. 584. 584. 584. 584. 584. 584. 584. 584. 584. 584. 584. 584. 585. 585. 585. 585. 589. 589. 589. 590. 590. 590. 590. 590. 590. 590. 591. 592. 592. 592. 592. 592. 592. 592. 593. 593. 593. 593. 593. 593. 595. 597. 597. 597. 597. 597. 597. 597. 598. 598. 598. 599. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 604. 604. 604. 607. 607. 607. 607. 607. 607. 607. 607. 607. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 608. 613. 613. 614. 616. 616. 616. 616. 616. 617. 617. 617. 617. 617. 617. 629. 632. 632. 869. 879. 879. 879. 883. 883. 883. 883. 883. 905. 905. 911. 911. 919. 919. 920. 920. 920. 920. 921. 921. 921. 921. 921. 921. 921. 921. 924. 924. 924. 924. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 926. 926. 926. 926. 926. 926. 926. 926. 927. 927. 927. 927. 927. 927. 934. 935. 935. 935. 941. 941. 941. 944. 944. 944. 944. 944. 944. 944. 944. 944. 944. 944. 944. 950. 950. 950. 950. 950. 950. 950. 953. 953. 953. 954. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 955. 956. 956. 956. 957. 957. 957. 957. 957. 957. 957. 957. 957. 957. 957. 957. 958. 958. 958. 958. 958. 958. 958. 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966.1014.1014.1014.1014.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1111.1111.1111.1111.1113.1113.1113.1169.1169.1169.1169.1169.1169.1169.1169.1171.1171.1171.1171.1171.1171.1171.1171.1171.1171.1171.1171.1171.1175.1175.1175.1175.1178.1178.1178.1185.1185.1185.1185.1193.1194.1194.1200.1203.1203.1203.1203.1207.1207.1209.1209.1209.1209.1209.1209.1209.1209.1209.1209.1209.1209.1209.1210.1211.1211.1211.1211.1211.1211.1211.1211.1211.1230.1230.1230.1230.1232.1232.1232.1232.1240.1240.1240.1240.1240.1240.1242.1243.1244.1244.1244.1244.1244.1244.1244.1244.1244.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1250.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1253.1256.1256.1256.1257.1257.1257.1257.1257.1257.1259.1259.1259.1259.1259.1259.1261.1261.1261.1261.1261.1262.1262.1262.1262.1262.1262.1262.1262.1262.1262.1262.1265.1267.1267.1267.1267.1267.1267.1268.1270.1270.1270.1270.1270.1270.1270.1270.1270.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1271.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1272.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1273.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1274.1275.1275.1275.1275.1275.1275.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1276.1291.1291.1291.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1292.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1299.1299.1299.1299.1299.1299.1299.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1381.1381.1381.1381.1385.1387.1387.1387.1388.1388.1388.1390.1390.1390.1390.1390.1390.1390.1390.1390.1390.1390.1391.1391.1391.1391.1391.1391.1391.1391.1391.1392.1392.1392.1392.1392.1393.1393.1393.1393.1393.1393.1395.1395.1400.1400.1400.1400.1400.1400.1400.1400.1400.1400.1400.1401.1401.1401.1401.1401.1401.1401.1401.1402.1402.1402.1402.1402.1402.1402.1402.1403.1406.1406.1406.1406.1406.1406.1406.1406.1406.1411.1411.1411.1412.1413.1413.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1414.1415.1415.1416.1416.1416.1416.1416.1416.1416.1416.1417.1417.1417.1417.1417.1421.1421.1422.1422.1422.1422.1422.1422.1422.1431.1433.1433.1434.1434.1434.1434.1434.1434.1435.1435.1435.1435.1457.1457.1457.1457.1459.1459.1459.1459.1459.1461.1461.1461.1461.1461.1461.1462.1462.1462.1462.1462.1462.1462.1464.1464.1464.1464.1471.1471.1471.1471.1491.1492.1492.1492.1494.1494.1494.1499.1499.1499.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 15m56.389s user 14m17.535s sys 0m0.083s Heavy solvent excluded grid being made FORTRAN STOP real 28m8.915s user 20m40.521s sys 0m0.138s