Creating binding-site residue list Creating molecular surface real 0m1.260s user 0m0.215s sys 0m0.130s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1038 spheres. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 15. 15. 15. 15. 15. 15. 15. 15. 15. 15. 15. 239. 239. 241. 241. 241. 241. 241. 241. 241. 241. 243. 243. 243. 244. 244. 244. 244. 244. 244. 244. 244. 244. 244. 250. 250. 250. 250. 350. 350. 350. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 355. 356. 356. 358. 358. 359. 359. 360. 360. 360. 360. 360. 360. 360. 360. 360. 707. 707. 707. 707. 707. 707. 707. 707. 708. 708. 708. 708. 708. 708. 708. 708. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 711. 711. 712. 712. 712. 716. 716. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 717. 718. 718. 718. 718. 718. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 727. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 732. 733. 733. 733. 733. 733. 733. 733. 752. 752. 978. 978. 978.1010.1010.1010.1010.1010.1010.1010.1010.1010.1010.1010.1010.1010.1010.1018.1018.1019.1019.1024.1025.1025.1025.1025.1026.1026.1027.1027.1027.1027.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1028.1033.1034.1034.1034.1034.1035.1036.1036.1036.1036.1036.1036.1036.1036.1036.1036.1036.1036.1037.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1042.1042.1042.1042.1042.1042.1042.1042.1046.1046.1046.1046.1046.1046.1046.1048.1048.1048.1048.1048.1048.1048.1048.1048.1048.1049.1049.1049.1049.1049.1049.1049.1049.1049.1049.1049.1049.1049.1049.1051.1051.1054.1054.1055.1055.1055.1055.1055.1055.1055.1055.1055.1055.1055.1055.1056.1056.1056.1056.1056.1056.1056.1056.1057.1057.1057.1057.1057.1057.1059.1059.1061.1061.1061.1062.1062.1062.1062.1062.1062.1062.1062.1064.1064.1064.1064.1064.1064.1064.1064.1064.1064.1065.1065.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1069.1073.1073.1073.1074.1074.1074.1074.1074.1074.1074.1074.1074.1076.1076.1076.1076.1076.1076.1076.1076.1076.1076.1076.1076.1076.1077.1077.1077.1077.1077.1077.1077.1077.1077.1077.1077.1077.1077.1077.1078.1080.1080.1080.1080.1080.1080.1080.1081.1081.1081.1081.1081.1081.1081.1081.1081.1081.1081.1081.1081.1081.1083.1084.1084.1084.1085.1085.1086.1086.1087.1087.1087.1087.1089.1089.1089.1089.1089.1089.1089.1089.1155.1155.1155.1155.1155.1155.1155.1276.1276.1277.1277.1277.1277.1281.1345.1345.1345.1345.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1351.1352.1357.1357.1357.1357.1361.1367.1367.1368.1369.1370.1370.1375.1375.1375.1375.1375.1375.1395.1398.1398.1398.1398.1398.1400.1402.1402.1402.1402.1402.1402.1403.1403.1405.1405.1405.1418.1418.1418.1418.1418.1418.1418.1421.1427.1427.1427.1427.1427.1427.1428.1428.1428.1428.1428.1429.1429.1429.1429.1429.1429.1432.1432.1433.1433.1433.1433.1435.1437.1437.1437.1437.1438.1438.1438.1438.1438.1438.1438.1438.1438.1438.1438.1438.1438.1443.1443.1443.1443.1443.1443.1443.1443.1443.1443.1443.1443.1443.1446.1446.1446.1446.1446.1446.1446.1446.1447.1447.1447.1447.1447.1447.1447.1447.1447.1447.1447.1447.1447.1448.1448.1448.1448.1448.1448.1448.1448.1448.1448.1448.1448.1449.1449.1449.1449.1449.1449.1449.1449.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1450.1451.1451.1451.1452.1454.1454.1454.1454.1454.1454.1454.1454.1454.1454.1454.1456.1458.1458.1458.1458.1458.1458.1458.1458.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1472.1472.1472.1472.1472.1472.1472.1472.1472.1472.1475.1475.1475.1475.1475.1475.1475.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1582.1590.1590.1590.1590.1590.1590.1590.1590.1590.1590.1590.1590.1590.1594.1595.1595.1595.1595.1596.1596.1597.1597.1599.1599.1599.1599.1599.1599.1599.1600.1600.1600.1600.1600.1600.1600.1600.1600.1600.1601.1602.1602.1602.1604.1604.1604.1612.1612.1613.1613.1613.1613.1613.1613.1613.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1615.1616.1619.1621.1621.1621.1622.1622.1622.1622.1622.1622.1622.1622.1624.1624.1624.1625.1625.1625.1625.1625.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1626.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1629.1629.1629.1630.1630.1630.1630.1630.1630.1630.1630.1634.1634.1634.1636.1636.1636.1636.1636.1636.1636.1636.1638.1638.1638.1638.1640.1641.1642.1646.1646.1648.1648.1648.1648.1648.1648.1648.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1649.1653.1654.1654.1654.1656.1656.1656.1656.1657.1657.1666.1666.1666.1670.1670.1670.1674.1674.1674.1674.1674.1675.1675.1675.1675.1675.1675.1675.1675.1675.1675.1675.1677.1678.1678.1679.1679.1684.1684.1684.1684.1684.1696.1705.1705.1705.1705.1705.1707.1707.1707.1707.1707.1707.1707.1712.1712.1712.1712.1712.1712.1712.1712.1712.1712.1712.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 16m37.864s user 16m6.470s sys 0m0.091s Heavy solvent excluded grid being made FORTRAN STOP real 25m55.513s user 22m14.598s sys 0m0.050s