DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-02.c.bkslab.org 10-Apr-12 19:25:58 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1613450 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -26.03400 -26.72700 32.54500 grid max 10.96600 10.27300 72.04500 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 maximum receptor sphere-sphere distance 14.27105 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 P00000001 16715 4384416 24 100 789.6 3.33 E P00000001 2 -10.15 -28.45 9.30 -5.14 -34.45 2 P00000001 2592 1534672 24 500 1491.0 0.96 E P00000001 4 -16.83 -28.38 10.68 -5.68 -40.20 3 P00000001 2481 757470 24 100 1277.2 0.59 E P00000001 2 -9.98 -29.24 9.36 -4.54 -34.40 4 P00000001 16687 4088855 24 100 6378.4 3.14 E P00000001 2 -3.08 -32.62 8.82 -5.68 -32.56 5 P00000001 2591 1480397 24 600 1362.5 0.94 E P00000001 4 -15.76 -30.74 9.61 -4.99 -41.88 6 P00000001 2481 751457 24 100 1290.0 0.59 E P00000001 2 -5.80 -29.83 8.02 -4.46 -32.07 7 P00000001 16715 4401368 24 100 6840.2 3.44 E P00000001 2 -10.42 -28.54 7.57 -5.04 -36.42 8 P00000001 2592 1555183 24 500 1235.6 0.98 E P00000001 4 -18.07 -28.44 8.45 -5.73 -43.79 9 P00000001 2481 762178 24 100 1272.9 0.61 E P00000001 2 -12.74 -27.62 7.41 -4.59 -37.54 10 P00000001 16687 4129235 24 100 5096.2 3.30 E P00000001 2 -3.59 -32.98 7.02 -5.88 -35.43 11 P00000001 2591 1494761 24 600 1343.5 0.99 E P00000001 4 -16.49 -30.98 7.62 -5.00 -44.85 12 P00000001 2481 749753 24 100 1197.3 0.61 E P00000001 2 -3.03 -31.49 8.42 -5.54 -31.63 13 P00000001 16715 3788195 24 48 2286.7 3.52 E P00000001 2 -27.04 -28.79 24.55 -5.30 -36.58 14 P00000001 2564 1691224 24 336 1405.9 1.21 E P00000001 3 -33.97 -28.48 25.14 -5.75 -43.06 15 P00000001 2483 595127 24 48 1298.9 0.58 E P00000001 2 -32.99 -26.65 24.45 -5.40 -40.58 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 2742020 for debugging, time = 25.48000 solvation corrected scores: (a) 1 P00000001 score: -44.852 nathvy = 24 nconfs = 600 2 P00000001 score: -43.791 nathvy = 24 nconfs = 500 3 P00000001 score: -43.058 nathvy = 24 nconfs = 336 4 P00000001 score: -41.884 nathvy = 24 nconfs = 600 5 P00000001 score: -40.585 nathvy = 24 nconfs = 48 6 P00000001 score: -40.197 nathvy = 24 nconfs = 500 7 P00000001 score: -37.540 nathvy = 24 nconfs = 100 8 P00000001 score: -36.584 nathvy = 24 nconfs = 48 9 P00000001 score: -36.418 nathvy = 24 nconfs = 100 10 P00000001 score: -35.433 nathvy = 24 nconfs = 100 11 P00000001 score: -34.447 nathvy = 24 nconfs = 100 12 P00000001 score: -34.401 nathvy = 24 nconfs = 100 13 P00000001 score: -32.561 nathvy = 24 nconfs = 100 14 P00000001 score: -32.070 nathvy = 24 nconfs = 100 15 P00000001 score: -31.635 nathvy = 24 nconfs = 100 Date and Time: 10-Apr-12 19:26:23 elapsed time (sec): 25.4800