Creating binding-site residue list Creating molecular surface real 0m1.836s user 0m0.305s sys 0m0.178s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1392 spheres. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 44. 45. 45. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 47. 49. 314. 315. 315. 316. 316. 316. 335. 335. 337. 339. 339. 339. 341. 341. 341. 341. 345. 345. 345. 345. 345. 345. 348. 348. 348. 348. 348. 348. 348. 348. 348. 348. 348. 348. 348. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 355. 356. 356. 367. 367. 369. 369. 369. 369. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 370. 373. 373. 373. 373. 374. 374. 374. 374. 375. 375. 375. 375. 375. 375. 375. 375. 375. 375. 375. 375. 376. 376. 376. 377. 377. 377. 377. 377. 377. 377. 380. 381. 381. 384. 384. 384. 384. 384. 384. 384. 384. 384. 384. 384. 384. 384. 464. 464. 464. 464. 464. 464. 468. 468. 468. 468. 468. 470. 470. 470. 488. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 495. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 497. 497. 497. 497. 497. 497. 497. 497. 497. 497. 497. 497. 497. 497. 501. 501. 501. 502. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 515. 517. 517. 517. 520. 520. 520. 522. 522. 522. 522. 522. 525. 525. 525. 525. 525. 525. 525. 525. 526. 527. 527. 527. 527. 527. 527. 527. 527. 527. 529. 532. 535. 535. 535. 535. 535. 535. 535. 536. 536. 536. 536. 536. 536. 536. 536. 536. 536. 536. 536. 536. 536. 915. 915. 915. 915. 915. 916. 916. 916. 916. 916. 916. 916. 916. 916. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 917. 918. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 923. 924. 924. 924. 924. 924. 924. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 925. 926. 926. 926. 926. 926. 926. 926. 926. 926. 926. 926. 926. 926. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 927. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 928. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 929. 930. 933. 933. 933. 933. 933. 933. 933. 933. 933. 933. 933. 933. 933. 933. 934. 934. 934. 934. 934. 934. 934. 934. 935. 935. 935. 935. 935. 935. 935. 935. 935. 935. 935. 935. 935. 936. 936. 936. 936. 937. 937. 944. 944. 945. 945. 945. 945. 945. 946. 952. 952. 952. 952. 952. 952. 952. 952. 952. 952. 952. 952. 952. 952. 957. 957. 957. 962. 962. 962. 965. 972. 973. 973. 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973.1003.1003.1003.1003.1003.1003.1003.1003.1003.1003.1003.1003.1003.1003.1039.1040.1040.1041.1041.1041.1041.1041.1041.1041.1041.1041.1041.1046.1046.1051.1051.1051.1051.1052.1052.1052.1061.1080.1080.1080.1081.1081.1081.1081.1262.1262.1262.1262.1283.1283.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1288.1294.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1295.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1296.1297.1297.1297.1297.1302.1302.1302.1302.1303.1303.1303.1303.1303.1303.1303.1303.1304.1304.1304.1304.1304.1304.1304.1304.1304.1304.1304.1305.1305.1305.1305.1307.1307.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1310.1311.1311.1311.1311.1311.1311.1311.1311.1312.1312.1312.1312.1313.1313.1318.1318.1318.1318.1318.1318.1319.1319.1319.1319.1319.1319.1319.1319.1319.1319.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1320.1329.1329.1329.1329.1329.1329.1329.1329.1329.1329.1329.1335.1336.1336.1336.1336.1336.1336.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1337.1338.1338.1338.1338.1338.1338.1338.1338.1338.1340.1340.1344.1344.1344.1344.1344.1344.1344.1344.1345.1345.1345.1346.1346.1346.1353.1353.1353.1353.1353.1353.1354.1359.1359.1359.1359.1359.1359.1359.1360.1360.1360.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1373.1375.1375.1376.1376.1377.1377.1377.1377.1378.1378.1378.1378.1380.1382.1382.1387.1388.1389.1431.1431.1431.1431.1431.1431.1431.1431.1432.1432.1432.1432.1432.1432.1433.1433.1433.1433.1433.1435.1435.1435.1435.1435.1435.1437.1438.1438.1438.1438.1438.1438.1438.1438.1439.1439.1439.1439.1439.1440.1440.1441.1441.1441.1441.1442.1442.1442.1442.1442.1442.1442.1442.1442.1442.1442.1444.1444.1445.1445.1447.1447.1448.1448.1448.1448.1448.1450.1453.1453.1454.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1460.1460.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1462.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1463.1465.1465.1465.1465.1465.1465.1465.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1468.1470.1470.1470.1475.1475.1477.1484.1484.1484.1484.1484.1484.1484.1484.1484.1484.1484.1484.1485.1485.1485.1485.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1491.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1498.1498.1498.1498.1498.1498.1499.1499.1499.1499.1499.1499.1499.1499.1500.1501.1501.1501.1501.1501.1501.1501.1501.1502.1502.1502.1502.1502.1502.1502.1503.1503.1503.1503.1503.1503.1503.1503.1503.1503.1504.1504.1504.1504.1504.1504.1504.1504.1504.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1505.1507.1509.1509.1511.1511.1511.1511.1511.1511.1511.1511.1512.1512.1512.1512.1512.1512.1512.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1513.1515.1517.1517.1517.1518.1518.1518.1518.1518.1525.1525.1525.1525.1525.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1526.1531.1531.1531.1531.1531.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1533.1533.1533.1545.1545.1545.1549.1549.1549.1549.1549.1551.1551.1551.1551.1551.1551.1551.1551.1555.1555.1557.1557.1557.1557.1557.1557.1557.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 28m14.544s user 28m8.872s sys 0m0.371s Heavy solvent excluded grid being made FORTRAN STOP real 40m1.325s user 39m58.183s sys 0m0.096s