usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -9.06364 -7.1446 55.8626
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1392
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 900
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 900
Number of spheres polar: 210, nonpolar: 576, out of current total: 900
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.02000 0.92697 -16.95324 2.83272 45.93934 65.85373
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 390
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 338
Spheres center of coords (x y z): -9.87338281065088 -9.45664778106508 56.9597589053254
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.28644739273004
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 45
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 25