Distance from surface specified: 1.80 There are 25 ligand heavy atoms Ligand center of coords (x y z): -9.06364 -7.1446 55.8626 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15118 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12309 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12033 Number of spheres polar: 5692, nonpolar: 5587, out of current total: 12033 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -23.04780 4.92860 -21.14360 6.84820 41.86360 69.62900 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1444 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 787 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 746 Spheres center of coords (x y z): -12.9228922252011 -5.13727024128686 58.753091689008 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.9040863771742 Final number of output spheres is: 200 Number of polar spheres: 77 Number of nonpolar spheres: 118 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 25