usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 20.6505172413793 50.9071034482759 50.5583448275862 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1601 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 738 Number of spheres polar: 188, nonpolar: 454, out of current total: 738 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.68175 30.52184 40.95346 60.85227 40.58167 60.52913 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 172 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 21.840894676259 47.4448735251799 52.7113189208633 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.241035831336 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 29