usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 15.2883571428571 52.7974047619048 15.9044523809524 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2437 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 947 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 947 Number of spheres polar: 304, nonpolar: 457, out of current total: 947 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.35362 25.25446 42.79770 62.79371 5.95805 25.81900 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 283 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 18.740105786802 51.5659626903553 18.2676563959391 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.88802223606867 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 42