usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 1.99018181818182 -7.5009696969697 -24.5693939393939 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1449 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 808 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 806 Number of spheres polar: 316, nonpolar: 368, out of current total: 806 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.89622 11.92537 -17.48100 2.44448 -34.56542 -14.60573 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 184 Spheres center of coords (x y z): 3.88611239130435 -4.53729934782609 -24.3074531521739 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.3453788374033 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33