usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 27.2448387096774 119.357741935484 37.969935483871 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1296 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 629 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 619 Number of spheres polar: 161, nonpolar: 235, out of current total: 619 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.44989 36.84568 109.37643 129.26422 28.09076 47.96628 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 258 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 202 Spheres center of coords (x y z): 27.7670886138614 118.924145247525 37.0568948019802 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53591466944275 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 31