usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): -36.5330344827586 14.2394482758621 -24.6260689655172 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1349 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 699 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 699 Number of spheres polar: 182, nonpolar: 434, out of current total: 699 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -46.52642 -26.54014 4.30182 24.06909 -34.51923 -14.64428 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Spheres center of coords (x y z): -37.5490229447853 13.5893439877301 -23.3752731288344 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35314624873237 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29