usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 44.5998787878788 79.7573636363636 39.5990606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1604 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 793 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788 Number of spheres polar: 202, nonpolar: 423, out of current total: 788 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.71392 54.55408 69.78157 89.74700 29.65700 49.58562 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 393 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 374 Spheres center of coords (x y z): 45.0568396524065 77.2077044652407 39.8541470855615 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40521414349544 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33