usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 0.632121212121212 5.45530303030303 34.2739696969697
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1916
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 888
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 888
Number of spheres polar: 358, nonpolar: 485, out of current total: 888
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.35482 10.61958 -4.48123 15.32937 25.50346 44.27245
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 431
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 335
Spheres center of coords (x y z): 2.40168764179104 5.68814695522388 33.7795886567164
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.03994033818826
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 33