usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 28.0859487179487 2.50207692307692 52.0705384615385
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2017
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 920
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 920
Number of spheres polar: 312, nonpolar: 495, out of current total: 920
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.20971 37.91789 -7.41308 12.49171 42.17410 62.05526
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 185
Spheres center of coords (x y z): 26.9795950810811 5.16253075675676 54.6286542702702
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.38983400451586
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 39