usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 18.046027027027 19.8292702702703 51.4462162162162 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1878 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 822 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 822 Number of spheres polar: 310, nonpolar: 432, out of current total: 822 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.03200 28.04321 9.83631 29.81556 41.45139 61.42294 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 432 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 357 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 320 Spheres center of coords (x y z): 16.08058496875 19.03071228125 52.648329 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61874784039636 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37