usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -66.7184285714286 80.4096785714286 108.246607142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1219 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 790 Number of spheres polar: 229, nonpolar: 424, out of current total: 790 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -75.95170 -56.88045 70.48862 90.37763 98.25083 118.20771 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): -64.7613480487805 81.5260154268293 105.387340487805 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.3055416717207 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 28