usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 17.8306486486487 16.0283783783784 55.2367297297297 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2022 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 868 Number of spheres polar: 281, nonpolar: 466, out of current total: 868 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.80600 27.82621 6.11266 26.01200 45.27139 65.20989 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 261 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 187 Spheres center of coords (x y z): 15.7283811229947 15.198102513369 57.1205078609626 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67719673355022 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37