usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 36.2796875 -8.866 -24.26853125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1603 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 774 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 774 Number of spheres polar: 287, nonpolar: 377, out of current total: 774 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.30226 46.25549 -17.69738 1.11850 -34.25800 -14.29598 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 360 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 326 Spheres center of coords (x y z): 37.2974260429448 -6.55531199386504 -24.0353771779141 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29762066763315 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32