usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 15.9211351351351 53.609027027027 15.2404864864865 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2190 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 851 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 851 Number of spheres polar: 256, nonpolar: 453, out of current total: 851 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.92853 25.92094 43.62700 63.57753 5.25980 25.15871 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 274 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 19.1424276555024 51.7174210047847 17.6689086602871 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25612216555594 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 37