usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): 15.3318974358974 -7.55302564102564 16.576282051282 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1869 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 820 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 261, nonpolar: 426, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.33829 25.30582 -17.53601 2.39900 6.58993 26.55504 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 208 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 16.8832498895028 -6.71784060773481 20.1313779005525 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1992756757124 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 39