usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 40.909 34.0145555555556 43.3278888888889
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1107
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 862
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 862
Number of spheres polar: 329, nonpolar: 383, out of current total: 862
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.40265 50.80407 24.03155 43.94371 33.55017 53.31372
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 411
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 341
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 336
Spheres center of coords (x y z): 42.74290375 31.6804074404762 43.7380130059524
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.52557912567276
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 9