usefragsph not on
There are 36 ligand heavy atoms
Ligand center of coords (x y z): 45.9314444444445 45.4512222222222 45.8461944444445
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2230
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879
Number of spheres polar: 252, nonpolar: 412, out of current total: 879
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.87484 55.92023 35.49105 55.44032 35.87023 55.80402
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 519
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 447
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 435
Spheres center of coords (x y z): 46.564152275862 46.2929002528735 46.6857210804597
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.52737516330965
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 36