usefragsph not on
There are 36 ligand heavy atoms
Ligand center of coords (x y z): 42.8446944444445 8.11361111111111 112.18825
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2136
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 940
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 940
Number of spheres polar: 310, nonpolar: 413, out of current total: 940
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.86791 52.82909 -1.76491 18.09797 102.19546 122.18434
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 495
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 433
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 432
Spheres center of coords (x y z): 42.2004166666667 9.62405303240741 111.814915949074
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.35513793190965
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 36