usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 45.2509743589744 45.763358974359 45.191717948718
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2062
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 882
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 882
Number of spheres polar: 278, nonpolar: 388, out of current total: 882
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.34377 55.23077 35.77756 55.75817 35.20093 55.17767
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 299
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 254
Spheres center of coords (x y z): 45.9596621259843 45.6880030314961 46.7217971259843
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.41603763352897
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 39