Distance from surface specified: 1.80
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 45.2509743589744 45.763358974359 45.191717948718
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 14791
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12380
WARNING: removing a crystallographic sphere that is distance 1.75449622399137 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 1.86313150367868 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11729
Number of spheres polar: 7791, nonpolar: 2985, out of current total: 11729
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.25120 59.20060 31.76380 59.76060 31.19300 59.19120
Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1286
Number of spheres after second pass removing spheres absolutely <0.9 from each other: 581
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 553
Spheres center of coords (x y z): 46.177461482821 46.3868423146473 46.9343566003616
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.44975394470043
Final number of output spheres is: 200
Number of polar spheres: 86
Number of nonpolar spheres: 102
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 37