usefragsph not on
There are 4 ligand heavy atoms
Ligand center of coords (x y z): 5.19475 63.24175 61.03775
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 686
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 544
WARNING: removing a crystallographic sphere that is distance 1.05206606256451 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 543
Number of spheres polar: 270, nonpolar: 221, out of current total: 543
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.09352 14.16753 53.59394 70.46371 56.07223 71.01530
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 238
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 195
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 186
Spheres center of coords (x y z): 2.66568225806452 65.9886898387097 65.4346563440861
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.72613979588065
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 3