usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 3.65766666666667 65.9863809523809 64.1072380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1110 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 646 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 646 Number of spheres polar: 226, nonpolar: 334, out of current total: 646 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.33944 13.55856 56.04610 75.94608 55.11490 74.09545 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 170 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 136 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 128 Spheres center of coords (x y z): 2.076977734375 64.32496796875 67.7750610156249 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30806995397731 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 21