usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 4.41683333333333 66.18275 63.7898333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1060
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 620
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 620
Number of spheres polar: 228, nonpolar: 331, out of current total: 620
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.42166 13.73868 56.18510 76.12406 54.81546 73.76607
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 166
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 133
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 119
Spheres center of coords (x y z): 2.23741201680672 64.9425583193277 67.4284859663865
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.86538704864794
Final number of output spheres is: 45
Number of polar spheres: 21
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 12