usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 2.52738235294118 63.6505 68.4284705882353 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1311 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 682 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 682 Number of spheres polar: 223, nonpolar: 345, out of current total: 682 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.45753 11.82510 53.65400 73.61101 59.80600 78.41576 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 250 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 1.55165897590361 63.2231196385542 69.955096686747 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.02250874230512 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 34