usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 1.67026470588235 64.9366176470588 68.2161764705882 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1688 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1044 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1044 Number of spheres polar: 332, nonpolar: 570, out of current total: 1044 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.32405 10.96986 54.94646 74.46244 59.87481 78.21409 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 304 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 0.309828383838384 63.5135813636363 70.1643489393939 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.52333417674553 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 34