usefragsph not on
There are 43 ligand heavy atoms
Ligand center of coords (x y z): -18.8543720930233 111.878511627907 40.0251395348837
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1524
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 886
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 882
Number of spheres polar: 340, nonpolar: 390, out of current total: 882
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -28.71047 -8.91247 101.91205 121.83083 30.03484 50.01979
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 501
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 438
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 387
Spheres center of coords (x y z): -20.1456327131783 111.522579043928 41.255186124031
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.57366925752832
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 43