usefragsph not on
There are 6 ligand heavy atoms
Ligand center of coords (x y z): 4.84533333333333 64.1096666666667 62.5645
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 820
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 573
WARNING: removing a crystallographic sphere that is distance 1.10643978598024 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 572
Number of spheres polar: 218, nonpolar: 297, out of current total: 572
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.17022 13.56926 54.37229 73.24300 56.89592 72.48260
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 267
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 211
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 194
Spheres center of coords (x y z): 2.34304283505155 66.140200927835 66.8530705154639
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.97299876787317
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 5