usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 93.5389047619047 50.1516666666667 21.7134761904762 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1245 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 706 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 706 Number of spheres polar: 190, nonpolar: 365, out of current total: 706 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 89.58173 103.50500 40.15722 60.04293 11.95896 31.47399 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 200 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 165 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 96.3413408974359 52.6125117307693 23.2459869871795 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55516189508738 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 21