usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 97.932 51.8436486486487 22.5576486486486 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1493 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 900 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 900 Number of spheres polar: 275, nonpolar: 467, out of current total: 900 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 89.00752 107.90871 43.28010 61.82400 12.90563 32.28506 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 437 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 381 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 372 Spheres center of coords (x y z): 99.388206236559 52.8318605645161 21.3065905376344 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98443951584816 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 37