usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 4.45566666666667 66.7146666666667 63.36625
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 908
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 537
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 537
Number of spheres polar: 194, nonpolar: 289, out of current total: 537
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.44292 14.44676 56.77161 76.51488 54.48404 73.33015
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 133
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 112
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 99
Spheres center of coords (x y z): 2.4112005050505 65.5174947474747 66.6427706060606
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.7796959980017
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 12