usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 0.5699 62.9297 71.6988 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1188 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 970 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 961 Number of spheres polar: 434, nonpolar: 362, out of current total: 961 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.42818 10.56475 53.00555 72.75129 61.87360 81.31496 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 462 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 363 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 342 Spheres center of coords (x y z): 0.686870847953216 64.0721045029239 71.4673714619883 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.12863745212676 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 10