usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 0.7625 62.049 71.3599 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1079 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 880 Number of spheres polar: 378, nonpolar: 351, out of current total: 880 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.23223 10.74349 52.15598 72.04400 61.45456 81.17346 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 374 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 356 Spheres center of coords (x y z): 0.745847275280899 63.1915246910113 71.3473513764045 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.28792502574631 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 10