usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 3.613 66.2638275862069 65.3660344827586
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1209
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 635
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 635
Number of spheres polar: 212, nonpolar: 328, out of current total: 635
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.38631 11.94992 56.28328 75.72587 58.68424 75.35880
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 138
Spheres center of coords (x y z): 1.90180565217391 64.748044710145 68.3510324637681
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.47538054371955
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 29