usefragsph not on
There are 36 ligand heavy atoms
Ligand center of coords (x y z): 42.0054444444445 24.585 4.43055555555556
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1426
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 627
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 612
Number of spheres polar: 242, nonpolar: 230, out of current total: 612
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.02349 51.95333 14.67600 33.96639 -5.48155 14.39975
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 351
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 293
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 262
Spheres center of coords (x y z): 39.0422661450382 25.4269048473282 6.3612504961832
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.37424647667153
Final number of output spheres is: 60
Number of polar spheres: 8
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 21
Final number of spheres that are from crystallographic ligand: 36